Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015835963.1_cds_XP_016506122.1_19386
CDS Infomation

[gene=LOC107823923] [db_xref=GeneID:107823923] [protein=PHD finger protein MALE MEIOCYTE DEATH 1-like] [protein_id=XP_016506122.1] [location=complement(join(14548..16072,16168..16411,16945..17242))] [gbkey=CDS]
Sequence

ATGTCTACGAAGATTTTTGAAGCTTACAAGAAGAGTAAAAGAACACCAAATTTCTATGGC
TTTCATAGTTTTCTTGATCCGGGTTGTCCAATTAAACCAACGGGTCCGTTTCGCGATAAC
GTTCGGTATTTTCTTCAACAGTGTGCTGAGCTTGAGGAGTATACAGTAGAAGGAATGCAA
ATTTGGAGTACATTTTTAGTGCATAAAAACAGAGGCGTTGCGATTCCTCTTTATACCATT
GAAGAAAACGTGAAGAATAATGATAGTAGAAGTTTTTGTGATCACTGTAGATGTGCTGGT
TGGAGTCATCATTTTGTTTCAAAGAGGAAATACCATTTGATTATACCAGCTGACTGTGAA
TGGAACCAGCATCTTAATGATGGTGTTTTTGATGATCAAACTCACATTTTGCATGGTTTG
ATTCATTGTAATGGATTTGGGCATTTGATTTGCATTAATGGAAATGAAGGTGGATCCAAA
TTTCTTTGTGGCCGCGAAGTTATGGACCTTTGGGATCGCATTTGCACTAATCTTAGAGCT
CGGAAAATCACTGTTGAAGATCTATCGAAGAAGCATTCGATGGATTTACGTTTGTTGTAT
GGGGTTGCCTATGGACATACATGGTTTGGCCGATGGGATTACAAATTTAGCCATGGAAGT
TTTGGGATAATGGAGCACAATTATGAAAGAGCTATTGAAATGCTCAGCTCAATTGAACTT
GATCAGGTGATTGAAGATTTCAGATACAGCAGCAGATCCAATGTAATGAAACAGATGGTT
GTTTGCTATAGAGGTTTGAGCGACGCTCCTTTGATCACGATTCGTGACCTCTTCAGATTC
ATGCTTGCTGTGAAGTCCTGCAATTCAATTAAGGAGAAGCCAAATGTTGCTCCTGTCGTA
CGAGCATGTTCTTCGTCGAGATACTTGATAAGAAATGCTTCACCAAGCAAGTCTGAGGGG
AAGGAAAAATCAGCAAGGTATAGAAAGTTTTCTAACATTGCAGCATCTCTTGACAGTAGA
TGGCCAGTGAGAAGACTTGAGTTCACTGCAGATGTGATTGTTGATGCATTGAAAGAAAAG
AAAGCAACAAACAGATTTGGGAGTTGTGGTATGAGTAGGCAGGAGGCACGTGATGCTGCT
CGTCTCCACATTGGCGATACGGGGTTGATTGATTATGTTCTGAAATCGATGAATAATGTG
ATTGTTGGAGGCTATGTAGTTCGTCGTGCAGTGAATCGAGCTACTAGGGTGTTGGAGTAC
ACGATTCAGGAGCTTCGGAATTGTGATCAGTCTGAACAAGAAAAGCTCCCTGAGCCAGTT
CAGAACTATGCTGTTAATCCTGGAACTGATGTTTACAGTGATGTTTTATGCTTGTATAAT
AATCTGCTATTGAGCTTTGCAGAATCTAATGTGCTAAAGCTAGCTGTTAGGACAGTTTTG
GATAGTAAGCATTTTGTGAAGGAATGGCCATTTAGGGATGATCCAGATGACATATTGTTG
AGGTTCATCTGCTGCATTTTGCCAAGTTCTAGTGGTTTGGAAGCTGTACTTAGAAAGGGA
TATCCCCCGGGAGAGATGGTTGAAGTTCCTCTACATTCGACAATTGGTGATTTAAAAACA
GCTATTGAGTCTGCAATGAGGGACACATATTGCATTATGGACAATTTTATGGTAACGGAC
ATTGTAGGGATGGAAACAATGGAAGATTGTGAAGTGCTCTTTGGCATTATAGAGTCAGGC
TCAGAACTTTGGGTGAGGGGTTTCGGGTTGGATTTGGAAAGTGAGTTGAAAAATGAAGGA
GGGGCTGATAATTGGACAGTGAATTGTAGATGTGGGGCTCGAGACGATGATGGTGAAAGG
ATGGTTTCGTGTGATATATGTGAGATATGGCAGCACACTCGCTGCTGTGGGATCGAAGAT
TCTGAGGTTGTGCCACCGTTGTTTGTGTGTGAGGCTTGTTGCACTTCACTTGCACCACCA
AGAGCACAGAACAGCTTTGAGTATGGTCTTTATGCGACATCATTAGTGCCTTGTGATTCT
GAATTTGGCATGGACCTGATATACTGA

Peptide Sequence

PEP ID

XP_016506122.1
PEP Infomation

PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Nicotiana tabacum]
Sequence

MSTKIFEAYKKSKRTPNFYGFHSFLDPGCPIKPTGPFRDNVRYFLQQCAELEEYTVEGMQ
IWSTFLVHKNRGVAIPLYTIEENVKNNDSRSFCDHCRCAGWSHHFVSKRKYHLIIPADCE
WNQHLNDGVFDDQTHILHGLIHCNGFGHLICINGNEGGSKFLCGREVMDLWDRICTNLRA
RKITVEDLSKKHSMDLRLLYGVAYGHTWFGRWDYKFSHGSFGIMEHNYERAIEMLSSIEL
DQVIEDFRYSSRSNVMKQMVVCYRGLSDAPLITIRDLFRFMLAVKSCNSIKEKPNVAPVV
RACSSSRYLIRNASPSKSEGKEKSARYRKFSNIAASLDSRWPVRRLEFTADVIVDALKEK
KATNRFGSCGMSRQEARDAARLHIGDTGLIDYVLKSMNNVIVGGYVVRRAVNRATRVLEY
TIQELRNCDQSEQEKLPEPVQNYAVNPGTDVYSDVLCLYNNLLLSFAESNVLKLAVRTVL
DSKHFVKEWPFRDDPDDILLRFICCILPSSSGLEAVLRKGYPPGEMVEVPLHSTIGDLKT
AIESAMRDTYCIMDNFMVTDIVGMETMEDCEVLFGIIESGSELWVRGFGLDLESELKNEG
GADNWTVNCRCGARDDDGERMVSCDICEIWQHTRCCGIEDSEVVPPLFVCEACCTSLAPP
RAQNSFEYGLYATSLVPCDSEFGMDLIY

Transcript Sequence

Gene sequence data has not been registered.